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simplified version of NHSM, have a significant potential for germ

cell induction, a distinguishing feature between naive mESCs

and primed mEpiSCs (Irie et al., 2015). Thus, we also culture-

adapted NHSM-hiPSCs in 4i medium (4i-hiPSCs), resulting in

stable 4i-hiPSCs with similar morphological and molecular char-

acteristics to parental NHSM-hiPSCs (Figure 4B). In addition, we

generated another type of hiPSC by direct reprogramming of

HFFs in a modified mEpiSC medium containing bFGF, Activin-

A, and CHIR99021 (FAC; Figure 4A). mEpiSCs cultured in FAC

medium exhibited features characteristic of both naive mESCs

and primed mEpiSCs, supporting an intermediate pluripotent

state (Tsukiyama and Ohinata, 2014). hiPSCs generated and

cultured in FAC medium (FAC-hiPSCs) displayed a colony

morphology intermediate between that of 2iLD- and primed

hiPSCs, with less defined borders (Figure 4B). 2iLD-hiPSCs,

NHSM-hiPSCs, 4i-hiPSCs, and FAC-hiPSCs could all be stably

maintained long term in culture, preserving normal karyotypes

and the homogeneous, nuclear localization of OCT4 protein

(Figure 4B; data not shown). Notably, similar to hiPSCs grown

in naive cultures (2iLD-hiPSCs, NHSM-hiPSCs, 4i-hiPSCs),

FAC-hiPSCs could also be efficiently propagated by single-cell

dissociation without using a ROCK kinase inhibitor. After inject-

ing cells into the kidney capsule of immunodeficient NSG mice,

all of these hiPSCs formed teratomas that consisted of tissues

from all three germ layers: endoderm, mesoderm, and ectoderm

(Figure S3A). To facilitate the identification of human cells in sub-

sequent chimera experiments, we labeled hiPSCs with either

green fluorescence protein (GFP) or hKO fluorescence markers.

Chimeric Contribution of hiPSCs to Pig and Cattle

Blastocysts

The ability to integrate into the inner cell mass (ICM) of a blasto-

cyst is informative for evaluating whether hiPSCs are compatible

with pre-implantation epiblasts of the ungulate species. This is

also one of the earliest indicators of chimeric capability. We

therefore evaluated interspecies chimeric ICM formation by in-

jecting hiPSCs into blastocysts from two ungulate species, pig

and cattle.

Cattle-assisted reproductive technologies, such as in vitro

embryo production, are well established given the commercial

benefits of improving the genetics of these animals. Cattle also

serve as a research model because of several similarities to hu-

man pre-implantation development (Hansen, 2014; Hasler,

2014). Using techniques for producing cattle embryos in vitro,

we developed a system for testing the ability and efficiency of

hiPSCs to survive in the blastocyst environment and to integrate

into the cattle ICM (Figure 4C). Cattle embryos were obtained by

in vitro fertilization (IVF) using in vitro matured oocytes collected

from ovaries obtained from a local slaughterhouse. The tightly

connected cells of the blastocyst trophectoderm from large live-

stock species, such as pig and cattle, form a barrier that compli-

cates cell microinjection into the blastocoel. Thus, microinjection

often results in embryo collapse and the inability to deposit the

cells into the embryo. To facilitate cell injection we employed a

laser-assisted approach, using the laser to perforate the zona

pellucida and to induce damage to a limited number of trophec-

toderm cells. This allowed for easy access into the blastocyst

cavity for transferring the human cells (Figure S3B). Furthermore,

the zona ablation and trophectoderm access allowed use a

blunt-end pipette for cell transfer, thus minimizing further em-

bryo damage. This method resulted in a nearly 100% injection

effectiveness and >90% embryo survival.

To determine whether hiPSCs could engraft into the cattle

ICM, we injected ten cells from each condition into cattle blasto-

cysts collected 7 days after fertilization. After injection, we

cultured these blastocysts for additional 2 days before analysis.

We used several criteria to evaluate the chimeric contribution of

hiPSCs to cattle blastocysts: (1) average number of human cells

in each blastocyst, (2) average number of human cells in each

ICM, (3) percentage of blastocysts with the presence of human

cells in the ICM, (4) percentage of SOX2+ human cells in the

ICM, and (5) percentage of human cells in the ICM that are

SOX2+ (Figure 4C). Our results indicated that both naive and in-

termediate (but not primed) hiPSCs could survive and integrate

into cattle ICMs, albeit with variable efficiencies (Figures 4D

and S3C–S3E; Table S4). Compared with other cell types,

4i-hiPSCs exhibited the best survival (22/23 blastocysts con-

tained human cells), but the majority of these cells lost SOX2

expression (only 13.6% of human cells remained SOX2+). On

average, 3.64 4i-hiPSCs were incorporated into the ICM.

NHSM-hiPSCs were detected in 46 of 59 injected blastocysts,

with 14.41 cells per ICM. Of these, 89.7% remained SOX2+.

For 2iLD-hiPSCs, 40 of 52 injected blastocysts contained human

cells, with 5.11 cells per ICM, and 69.9% of the ICM-incorpo-

rated human cells remained SOX2+. FAC-hiPSCs exhibited

moderate survival rate (65/101) and ICM incorporation efficiency

(39/101), with an average of 2.31 cells incorporated into the ICM,

and 89.3% remaining SOX2+.

We also performed ICM incorporation assays by injecting

hiPSCs into pig blastocysts. Because certain complications

are frequently associated with pig IVF (Abeydeera, 2002;

Grupen, 2014) (e.g., high levels of polyspermic fertilization), we

used a parthenogenetic activation model, which enabled us to

efficiently produce embryos that developed into blastocysts

(King et al., 2002). Pig oocytes were obtained from ovaries

collected at a local slaughterhouse. Once the oocytes were

matured in vitro, we removed the cumulus cells and artificially

activated the oocytes using electrical stimulation. They were

then cultured to blastocyst stage (Figure 4C). We injected ten

hiPSCs into each pig parthenogenetic blastocyst and evaluated

their chimeric contribution after 2 days of in vitro culture (Figures

4C and S3C–S3E; Table S4). Similar to the results in cattle, we

found that hiPSCs cultured in 4i and NHSM media survived bet-

ter and yielded a higher percentage of blastocysts harboring

human cells (28/35 and 37/44, respectively). Also, among all

blastocysts containing human cells, we observed an average

of 9.5 cells per blastocyst for 4i-hiPSCs and 9.97 cells for

NHSM-hiPSCs. For NHSM-hiPSCs, 19/44 blastocysts had

human cells incorporated into the ICM. In contrast, only 6/35

blastocysts had 4i-hiPSCs localized to the ICM. For 2iLD-

hiPSCs, we observed an average of 5.7 cells per blastocyst,

with 2.25 human cells localized to the ICM. For FAC-hiPSCs,

an average of 3.96 and 1.62 human cells were found in the blas-

tocyst and ICM, respectively. Once incorporated into the ICM,

82.2%, 72%, 60.9%, and 40% of 2iLD-, 4i-, NHSM-, and FAC-

hiPSCs, respectively, stained positive for the pluripotency

Cell

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